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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121092794_121093759_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121092794 - 121093759
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTCCTCTCCA
Flanking Amino Acid:
HSELMETFLTEYLTDLQGRS
Intron Amino Acid Position:
1475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
68.4
36.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
89.2
0.88
0.6
81.6
30.4
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
43.7
-0.5
3.7
75.86
41.2

Associated Gene:

Gene:
BCOR
Ensembl Gene ID:
ENSAPLG00000004502
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004634
121090113 - 121122737
32625
ENSAPLT00000044981
121090113 - 121122737
32625
ENSAPLT00000040204
121090113 - 121122737
32625