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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121103397_121103766_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
121103397 - 121103766
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTTA
5'SS Class:
weak_major
3'SS Sequence:
ACGATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
ACGACCTAAACA
Flanking Amino Acid:
TTDIENAEDKVTVMRKVRKR
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
76.7
34.9
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
65.7
0.35
1.1
60.8
44.2
Minor 5ss
68.9
0.64
1.8
75.8
40.1
Minor BPS
55.8
0.18
1.8
62.21
44

Associated Gene:

Gene:
BCOR
Ensembl Gene ID:
ENSAPLG00000004502
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044981
121090113 - 121122737
32625
ENSAPLT00000040204
121090113 - 121122737
32625
ENSAPLT00000004634
121090113 - 121122737
32625