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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121116160_121117374_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121116160 - 121117374
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATCA
Flanking Amino Acid:
QLSREQRALQRAMMRFSELE
Intron Amino Acid Position:
998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
81.6
0.71
0.8
74.1
36
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
62.4
0.39
1.9
79.95
36

Associated Gene:

Gene:
BCOR
Ensembl Gene ID:
ENSAPLG00000004502
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040204
121090113 - 121122737
32625