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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121121206_121122607_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121121206 - 121122607
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTTAAAA
Flanking Amino Acid:
RVRMCGINEDRKIPVNDGDA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.4
0.48
1
67.6
41.7
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
63.2
0.41
1.4
67.43
39.5

Associated Gene:

Gene:
BCOR
Ensembl Gene ID:
ENSAPLG00000004502
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004634
121090113 - 121122737
32625
ENSAPLT00000044981
121090113 - 121122737
32625
ENSAPLT00000040204
121090113 - 121122737
32625