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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12117682_12117837_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12117682 - 12117837
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTCTCCCTCACA
Flanking Amino Acid:
LLLEKLGSRQCSRPISERRP
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.7
0.71
0.7
76.1
26
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
59.1
0.28
2.1
75.88
41.5

Associated Gene:

Gene:
GSAP
Ensembl Gene ID:
ENSAPLG00000012156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032612
12073688 - 12119086
45399
ENSAPLT00000012725
12073688 - 12119086
45399
ENSAPLT00000040890
12073688 - 12119086
45399
ENSAPLT00000033268
12073688 - 12119086
45399