About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12122476_12123863_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12122476 - 12123863
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCACTTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AAGACCTAAAAT
Flanking Amino Acid:
QQDTLLLATRISELQKKIKD
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.4
45.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
78.2
0.64
0.9
69.8
40
Minor 5ss
32.4
-2
2.9
32.4
41.9
Minor BPS
50.2
0.09
1.8
65.94
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012643
12120781 - 12134577
13797