Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12125032_12131266_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12125032 - 12131266

Intron Length:

6235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTGGG

5'SS Class:

major

3'SS Sequence:

TTTTGTTTGCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAATAAC

U12 Branch Point Sequence:

GCACCAATAACC

Flanking Amino Acid:

DADLVVLQIQYSQCKDRIKQ

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.2

59.2

45.8

Major BPS

57.8

0.19

1.1

59.6

32.6

Major PPT

77.9

0.63

73.5

41.9

Minor 5ss

27.1

-2.6

3.1

32.2

42.4

Minor BPS

47.2

-0.2

1.9

56.36

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012138

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012643

12120781 - 12134577

13797