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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121263049_121267227_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121263049 - 121267227
Intron Length:
4179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
TATTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATACAAC
U12 Branch Point Sequence:
TATTTTGTAACA
Flanking Amino Acid:
RCCWSRPAWPDLSWPGLAVG
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
51.7
46.6
Major BPS
48.6
-0
1.2
56.8
35.9
Major PPT
77.5
0.62
1
73.6
40.4
Minor 5ss
25.2
-2.9
3.1
30.3
42.8
Minor BPS
61.4
0.35
2
75.62
35.9

Associated Gene:

Gene:
ATP6AP2
Ensembl Gene ID:
ENSAPLG00000015929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022052
121262728 - 121273119
10392