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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121267357_121268484_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121267357 - 121268484
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTTACCCCAAAA
Flanking Amino Acid:
VKGISYPIENAVPFSMDSVA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
69.1
0.48
1
70
32.1
Major PPT
83.1
0.74
0.9
80.3
37.3
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
50.2
0
2
71.26
39.9

Associated Gene:

Gene:
ATP6AP2
Ensembl Gene ID:
ENSAPLG00000015929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022052
121262728 - 121273119
10392
ENSAPLT00000019569
121264115 - 121272641
8527
ENSAPLT00000016629
121262991 - 121273119
10129