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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121267357_121268775_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121267357 - 121268775
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
GCTATTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTATTAAACA
Flanking Amino Acid:
VKGISYPIENRVYMVGKANS
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.6
0.6
0.9
69.7
36.6
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
58.6
0.27
1.9
71.69
40.8

Associated Gene:

Gene:
ATP6AP2
Ensembl Gene ID:
ENSAPLG00000015929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037581
121264020 - 121272296
8277