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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121268581_121268775_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121268581 - 121268775
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTATTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTATTAAACA
Flanking Amino Acid:
VVLQLAPSEERVYMVGKANS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.6
0.6
0.9
69.7
36.6
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
58.6
0.27
1.9
71.69
40.8

Associated Gene:

Gene:
ATP6AP2
Ensembl Gene ID:
ENSAPLG00000015929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022052
121262728 - 121273119
10392
ENSAPLT00000019569
121264115 - 121272641
8527
ENSAPLT00000016629
121262991 - 121273119
10129