About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121269271_121270198_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121269271 - 121270198
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTGTCCTCAATT
Flanking Amino Acid:
LQVLHDIASLLSRHKHLAKD
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
63.8
0.31
1.1
63.8
37.3
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
68.7
0.67
1.6
79.94
42.6

Associated Gene:

Gene:
ATP6AP2
Ensembl Gene ID:
ENSAPLG00000015929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022052
121262728 - 121273119
10392
ENSAPLT00000019569
121264115 - 121272641
8527
ENSAPLT00000016629
121262991 - 121273119
10129
ENSAPLT00000037581
121264020 - 121272296
8277