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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121270349_121271140_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
121270349 - 121271140
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTCAATTAAGT
Flanking Amino Acid:
SQILVDSLQKFADEMYNLYS
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
81.6
0.71
0.8
74
36.7
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
53.9
0.2
2.1
80.09
41.1

Associated Gene:

Gene:
ATP6AP2
Ensembl Gene ID:
ENSAPLG00000015929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022052
121262728 - 121273119
10392
ENSAPLT00000019569
121264115 - 121272641
8527
ENSAPLT00000016629
121262991 - 121273119
10129
ENSAPLT00000037581
121264020 - 121272296
8277