About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121271258_121272101_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121271258 - 121272101
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATAC
5'SS Class:
major
3'SS Sequence:
TTCTTCGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ATGCACTTATTT
Flanking Amino Acid:
KTRSILQSSQSESDNPYNLA
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.7
33.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.1
0.79
0.8
79.6
32.5
Minor 5ss
44.4
-0.6
2.8
59.1
45.7
Minor BPS
50.8
0.1
1.8
68.95
42

Associated Gene:

Gene:
ATP6AP2
Ensembl Gene ID:
ENSAPLG00000015929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019569
121264115 - 121272641
8527
ENSAPLT00000016629
121262991 - 121273119
10129
ENSAPLT00000037581
121264020 - 121272296
8277
ENSAPLT00000022052
121262728 - 121273119
10392