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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121289585_121290158_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121289585 - 121290158
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCCCCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTCCCCCCCACA
Flanking Amino Acid:
VVLKSKMLFFLQLTQKTTVP
Intron Amino Acid Position:
1295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
75.1
0.57
0.7
68.7
25.1
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
44.9
-0.4
2.2
61.96
43.8

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016499
121285696 - 121320364
34669
ENSAPLT00000020506
121285551 - 121322515
36965
ENSAPLT00000020036
121285696 - 121322515
36820