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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121290285_121290729_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121290285 - 121290729
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTCTCTGAACA
Flanking Amino Acid:
DCVHIMKLELFPDQASQLKW
Intron Amino Acid Position:
1253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
72.4
0.5
1
69.1
35.8
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
66
0.5
1.4
73.43
38.1

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020506
121285551 - 121322515
36965
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669