Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121291228_121291894_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121291228 - 121291894

Intron Length:

667

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGGTTT

5'SS Class:

major

3'SS Sequence:

TCTTTTTGTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

ACTCACTGAACG

Flanking Amino Acid:

HLQRIIQQETLQLINSNEPG

Intron Amino Acid Position:

1157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

72.5

39.3

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

86.9

0.83

0.8

83.2

31.9

Minor 5ss

49.2

-0

3.1

73.3

43.5

Minor BPS

51.1

-0.1

1.7

57.68

43.2

Associated Gene:

Gene:

MED14

Ensembl Gene ID:

ENSAPLG00000015774

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020506

121285551 - 121322515

36965

ENSAPLT00000020036

121285696 - 121322515

36820

ENSAPLT00000016499

121285696 - 121320364

34669