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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121292131_121294190_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121292131 - 121294190
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTACCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TCTTCCTTACCA
Flanking Amino Acid:
GQTANFASPHGSQAMPTSMP
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.3
33.7
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
67.4
0.39
0.9
63.2
32
Minor 5ss
36.5
-1.5
2.8
45.9
42.3
Minor BPS
76.3
0.82
1.6
83.03
38.2

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020036
121285696 - 121322515
36820