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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121297251_121298340_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121297251 - 121298340
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGATGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGTTCTTGATG
Flanking Amino Acid:
LCYGTTKGSSISIQWNSILQ
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.6
0.49
1
65.5
40.7
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
64.4
0.31
1.3
63.64
38.9

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020506
121285551 - 121322515
36965
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669