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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121302000_121302373_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121302000 - 121302373
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGTTTAAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTGTTTAAAT
Flanking Amino Acid:
KLTRLPQYYIVVEMFDVSGN
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
69.6
0.44
1
63.9
41
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
69.5
0.69
1.8
88.96
35.8

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669
ENSAPLT00000020506
121285551 - 121322515
36965