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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121302534_121304124_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121302534 - 121304124
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGCCTTTATTT
Flanking Amino Acid:
KRIIPWLQQLKFWLGQQRCK
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
63.8
0.31
1.2
69.1
40.6
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
57.4
0.31
1.6
71.42
40.2

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020506
121285551 - 121322515
36965
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669