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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121306038_121308229_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121306038 - 121308229
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
DSKLMERAMKIDHLSIEKLL
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020506
121285551 - 121322515
36965
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669