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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121309681_121310074_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
121309681 - 121310074
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATAATA
5'SS Class:
major
3'SS Sequence:
TAATTCCTGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
EILVEDKETGDGRALVHSMQ
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
74
36.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
58.9
0.2
1.2
60.4
40.2
Minor 5ss
37.6
-1.4
3.1
50.5
45.6
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669
ENSAPLT00000020506
121285551 - 121322515
36965