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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121310204_121312272_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121310204 - 121312272
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AGGAAAATAAAA
Flanking Amino Acid:
LPPQLANLTVANGRVKFRVE
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
81.3
0.71
0.7
81.1
24.1
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
38.5
-0.8
1.9
44.7
36.1

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669
ENSAPLT00000020506
121285551 - 121322515
36965