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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121313328_121314012_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121313328 - 121314012
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTGACAT
Flanking Amino Acid:
NNAGKVEKCAMISSFLDQQA
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.3
37.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.6
0.8
0.8
80.4
31.7
Minor 5ss
40
-1.1
2.8
50
46.2
Minor BPS
53
0.17
1.8
77.37
39.2

Associated Gene:

Gene:
MED14
Ensembl Gene ID:
ENSAPLG00000015774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020506
121285551 - 121322515
36965
ENSAPLT00000020036
121285696 - 121322515
36820
ENSAPLT00000016499
121285696 - 121320364
34669