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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12131496_12132084_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12131496 - 12132084
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACGTG
5'SS Class:
major
3'SS Sequence:
GGGCTTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAAGTCTTACCT
Flanking Amino Acid:
YERAIQQKNESGLLLKSREE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
62.1
42.6
Major BPS
100
1.24
0.5
100
0
Major PPT
69.7
0.44
1
62.3
43.1
Minor 5ss
45.4
-0.5
3.3
63.6
48.1
Minor BPS
58
0.33
1.7
73.36
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012643
12120781 - 12134577
13797