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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121409368_121409615_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121409368 - 121409615
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTTGATCACTT
Flanking Amino Acid:
LNVQIIAALIKPFGQCYEFL
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
85.6
0.8
0.7
84.6
30.4
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
43.4
-0.4
2.3
67.66
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040276
121399535 - 121470659
71125
ENSAPLT00000015528
121399535 - 121470525
70991
ENSAPLT00000043956
121399535 - 121470659
71125