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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121409868_121409943_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121409868 - 121409943
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATT
Flanking Amino Acid:
LEIFRLKMILRLLQISSFNG
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87
0.83
0.7
80.9
30.5
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
65.4
0.56
1.4
79.41
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043956
121399535 - 121470659
71125
ENSAPLT00000040276
121399535 - 121470659
71125
ENSAPLT00000015528
121399535 - 121470525
70991