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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121410083_121411637_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121410083 - 121411637
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTATATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATAT
Flanking Amino Acid:
EEWLTAERMAEWIQQNNILS
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.8
86.2
32.2
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
58.3
0.34
1.7
76.11
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043956
121399535 - 121470659
71125
ENSAPLT00000040276
121399535 - 121470659
71125
ENSAPLT00000015528
121399535 - 121470525
70991