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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121418005_121418607_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121418005 - 121418607
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATATACTTGATT
Flanking Amino Acid:
IKILDYSCSQDRDTQKIQWI
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
84.8
26.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.5
0.57
1
79.3
33.1
Minor 5ss
38
-1.3
2.7
50.1
46.4
Minor BPS
66.2
0.59
1.5
79.24
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040276
121399535 - 121470659
71125
ENSAPLT00000015528
121399535 - 121470525
70991
ENSAPLT00000043956
121399535 - 121470659
71125