Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121433703_121435372_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121433703 - 121435372

Intron Length:

1670

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GTTTGTTTATTT

Flanking Amino Acid:

HEERTILPMSRAFRGKHITL

Intron Amino Acid Position:

879

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

68.8

42.3

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

87.8

0.85

0.8

85.4

34.1

Minor 5ss

38.2

-1.3

3.1

49.2

47.1

Minor BPS

54.6

0.22

76.04

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014792

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043956

121399535 - 121470659

71125

ENSAPLT00000040276

121399535 - 121470659

71125

ENSAPLT00000015528

121399535 - 121470525

70991