Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121447430_121448165_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121447430 - 121448165

Intron Length:

736

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATGTTAATAAGT

Flanking Amino Acid:

CEKGGANLIKELIDDFIFPA

Intron Amino Acid Position:

1461

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

81.6

33.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.1

0.81

0.8

84.1

30.8

Minor 5ss

55.3

0.18

2.7

73.8

36.4

Minor BPS

46.5

-0.1

2.1

68.03

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014792

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040276

121399535 - 121470659

71125

ENSAPLT00000015528

121399535 - 121470525

70991