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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121448389_121450036_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121448389 - 121450036
Intron Length:
1648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
TATTTTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTTTTCTAACC
Flanking Amino Acid:
EMYYIGTAITTCEALTEWEY
Intron Amino Acid Position:
1535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
75.2
34.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82
0.72
0.7
81.8
29.8
Minor 5ss
45.3
-0.5
2.6
61.1
38.7
Minor BPS
65.7
0.47
1.6
76.94
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043956
121399535 - 121470659
71125
ENSAPLT00000040276
121399535 - 121470659
71125
ENSAPLT00000015528
121399535 - 121470525
70991