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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12145015_12151686_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12145015 - 12151686
Intron Length:
6672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
GATTTTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTGCTTTGATT
Flanking Amino Acid:
REYEIQFRVKCLQEEKTLLE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.4
0.66
0.8
74.1
36.3
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
66.6
0.6
1.3
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029814
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037909
12140018 - 12157693
17676