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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121450258_121450651_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121450258 - 121450651
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TCAAAGTTAATT
Flanking Amino Acid:
MSGDEKQDNESNVDPRDDVF
Intron Amino Acid Position:
1609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
70.2
0.5
1
72.1
33
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
47.5
-0.1
2.2
66.41
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015528
121399535 - 121470525
70991
ENSAPLT00000043956
121399535 - 121470659
71125
ENSAPLT00000040276
121399535 - 121470659
71125