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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121455435_121456699_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
121455435 - 121456699
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATCTTAT
5'SS Class:
weak_major
3'SS Sequence:
CGTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAG
U12 Branch Point Sequence:
TATCGTTTATTT
Flanking Amino Acid:
KKIVRGPASDWYDALCILLR
Intron Amino Acid Position:
2069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
69.3
37.6
Major BPS
60.8
0.27
1.6
60.1
46.3
Major PPT
84.1
0.77
0.8
81.1
35.5
Minor 5ss
62.8
0.43
2.1
72.3
40
Minor BPS
49.1
0.01
2
70.17
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015528
121399535 - 121470525
70991
ENSAPLT00000043956
121399535 - 121470659
71125
ENSAPLT00000040276
121399535 - 121470659
71125