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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121467908_121468282_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121467908 - 121468282
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATTCTGAAGT
Flanking Amino Acid:
NCPVAYQILQSNGDLKRKWT
Intron Amino Acid Position:
2406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
100
1.24
0.5
100
0
Major PPT
87.2
0.84
0.7
82
28.6
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
58.2
0.34
1.8
74.78
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043956
121399535 - 121470659
71125
ENSAPLT00000040276
121399535 - 121470659
71125
ENSAPLT00000015528
121399535 - 121470525
70991