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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121469794_121470524_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
121469794 - 121470524
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
76.7
36.2
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015528
121399535 - 121470525
70991