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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121481686_121481903_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121481686 - 121481903
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TCCTTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTCCTTATAT
Flanking Amino Acid:
WPRVRGVAMNPVEHPFGGGN
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
74.1
38.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.5
0.75
0.7
79.2
26.5
Minor 5ss
34.9
-1.7
2.9
40.4
38.9
Minor BPS
70.3
0.72
1.7
86.46
38.9

Associated Gene:

Gene:
RPL8
Ensembl Gene ID:
ENSAPLG00000014582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015252
121481470 - 121485303
3834