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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121482900_121483274_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121482900 - 121483274
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTGAA
U12 Branch Point Sequence:
CCGAGTGAAGCT
Flanking Amino Acid:
TGQFVYCGKKAQLNIGNVLP
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
48.6
-0
1.3
41.1
41.4
Major PPT
75.5
0.57
0.8
70
30.9
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
29.7
-1.4
2.2
38.91
42.8

Associated Gene:

Gene:
RPL8
Ensembl Gene ID:
ENSAPLG00000014582
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015252
121481470 - 121485303
3834