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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121510689_121513817_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121510689 - 121513817
Intron Length:
3129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTATTTTATTC
Flanking Amino Acid:
MEDLSRRMFSGLDLNSSD
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.5
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.5
0.87
0.7
81.2
36.2
Minor 5ss
33.8
-1.8
3.4
45.5
45
Minor BPS
52.7
0.07
1.6
62.95
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019981
121510665 - 121526222
15558