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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121510757_121513817_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121510757 - 121513817
Intron Length:
3061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTATTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTATTTTATTC
Flanking Amino Acid:
MCFSGLDLNSSD
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
67.9
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.5
0.87
0.7
81.2
36.2
Minor 5ss
31.9
-2.1
3.3
42.4
44.3
Minor BPS
52.7
0.07
1.6
62.95
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014911
121510751 - 121526222
15472