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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12151897_12157371_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12151897 - 12157371
Intron Length:
5475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAT
5'SS Class:
major
3'SS Sequence:
CTATTTAATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATG
Flanking Amino Acid:
KYTLLHETVISLQKSEIQLL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.2
35.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.4
0.48
0.9
67.3
37.9
Minor 5ss
37.9
-1.4
3.4
55.8
48.4
Minor BPS
65
0.33
1.6
67.74
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029814
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037909
12140018 - 12157693
17676