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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121521194_121521718_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121521194 - 121521718
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
AAATATCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CCATACTTAAAT
Flanking Amino Acid:
GSNCPPHIESFSDVDMGEII
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
70.8
0.47
1
62.4
43
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
59.6
0.38
1.7
71.17
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044453
121513006 - 121526890
13885
ENSAPLT00000019981
121510665 - 121526222
15558
ENSAPLT00000014911
121510751 - 121526222
15472