Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121523298_121523483_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121523298 - 121523483

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTATTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CTCTTCTTATTT

Flanking Amino Acid:

ERGKIGLDFCKYLVLDEADR

Intron Amino Acid Position:

321

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.4

26.8

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

81.6

0.71

0.8

81.5

29.3

Minor 5ss

33.7

-1.9

3.2

40.3

40.1

Minor BPS

61.9

0.45

1.6

74.56

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014240

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044453

121513006 - 121526890

13885

ENSAPLT00000019981

121510665 - 121526222

15558

ENSAPLT00000014911

121510751 - 121526222

15472