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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121524564_121525144_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121524564 - 121525144
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TAAAACTGAATA
Flanking Amino Acid:
IGRTGRVGNLGLATSFFNER
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
74.2
0.55
0.9
72.1
38.3
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
50
-0
1.6
60.89
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019981
121510665 - 121526222
15558
ENSAPLT00000014911
121510751 - 121526222
15472
ENSAPLT00000044453
121513006 - 121526890
13885