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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121525302_121525915_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
121525302 - 121525915
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTTACTGAAGT
Flanking Amino Acid:
KGGGSRGRSKSSRFSGGFGA
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
78.8
35.1
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
81.2
0.7
0.8
76.3
31.3
Minor 5ss
36.9
-1.5
3.3
51.7
45.1
Minor BPS
63
0.49
2
86.18
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019981
121510665 - 121526222
15558
ENSAPLT00000014911
121510751 - 121526222
15472
ENSAPLT00000044453
121513006 - 121526890
13885