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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121526044_121526395_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121526044 - 121526395
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTGCCTTTCATA
Flanking Amino Acid:
SGGSGSRGFGGGGYGGFYNS
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
76.5
0.6
0.8
72.2
32.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
56.4
0.2
1.7
68.12
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044453
121513006 - 121526890
13885