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Intron Name: Anas_platyrhynchos_platyrhynchos_1_121548233_121549357_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

121548233 - 121549357

Intron Length:

1125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCTTT

5'SS Class:

major

3'SS Sequence:

CATTAAATGATAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

CTGCCATTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

74.8

38.1

Major BPS

73.5

0.58

79.3

29.4

Major PPT

57.4

0.17

1.1

51.7

41.3

Minor 5ss

42.9

-0.8

3.4

63.6

48.1

Minor BPS

0.27

1.8

72.17

44.1

Associated Gene:

Gene:

NYX

Ensembl Gene ID:

ENSAPLG00000002105

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002101

121548089 - 121554812

6724