About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_121549900_121553412_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
121549900 - 121553412
Intron Length:
3513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CACACCTCCACG
Flanking Amino Acid:
MPLVNNQVILWVPRAHA
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
50
0
1.2
61.8
35.9
Major PPT
71.8
0.49
0.9
68.1
32
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
44
-0.6
2.1
45.34
46.5

Associated Gene:

Gene:
NYX
Ensembl Gene ID:
ENSAPLG00000002105
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002101
121548089 - 121554812
6724